Mageswaran SK, Yang WY(corresponding author), Chakrabarty Y, Oikonomou C, and Jensen GJ, “A cryo-electron tomography workflow reveals protrusion-mediated shedding on injured plasma membrane”, Science Advances, 7, eabc6345, (2021).

Klionsky DJ et al., “Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)”, Autophagy, 17, 1-382, (2021).

Chen BH, Chang YJ, Lin S, and Yang WY, “Hsc70/Stub1 promotes the removal of individual oxidatively stressed peroxisomes”, Nature Communications, 11, 5267, (2020).

Chen PL, Huang KT, Cheng CY, Li JC, Chen HY, Lin TY, Su MP, Yang WY, Chang HC, Wang HD, and Chen CH, “Vesicular transport mediates the uptake of cytoplasmic proteins into mitochondria in Drosophila melanogaster”, Nature Communications, 11, 2592, (2020).

Hong MH, Lin WH, Weng IC, Hung YH, Chen HL, Chen HY, Chen P, Lin CH, Yang WY, and Liu FT, “Intracellular galectins control cellular responses commensurate with cell surface carbohydrate composition”, Glycobiology, 30, 36-48, (2020).

Hsieh CW and Yang WY, “Omegasome-proximal PtdIns(4,5)P2 couples F-actin mediated mitoaggregate disassembly with autophagosome formation during mitophagy”, Nature Communications, 10, 969, (2019).

Chen YC, Cheng TH, Lin WL, Chen CL, Yang WY, Blackstone C, and Chang CR, “Srv2 is a pro-fission factor that modulates yeast mitochondrial morphology and respiration by regulating actin assembly”, iScience, 18, 30251-30257, (2019).

Hsieh CW and Yang WY, “Triggering mitophagy with photosensitizers”, Methods in Molecular Biology, 1880, 611-619, (2019).

Chu YP, Hung YH, Chang HY, and Yang WY, “Assays to monitor lysophagy”, Methods in Enzymology, 588, 231-244, (2017).

Chen BC, Yang HJ, Chou HY, Chen GC, and Yang WY, “Staining lipid droplets with monodansylpentane”, Methods in Molecular Biology, 1560, 231-236, (2017).

Klionsky DJ et al., “Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)”, Autophagy, 12, 1-222, (2016).

Yang WY, “Optogenetic probing of mitochondrial damage responses”, Annals of the New York Academy of Sciences, 1350, 48-51, (2015).

Hsieh CW, Chu CH, Lee HM, and Yang WY, “Triggering mitophagy with far-red fluorescent photosensitizers”, Scientific Reports 4, 2428, (2015).

Yang JY and Yang WY, “Bit-by-bit autophagic removal of parkin-labelled mitochondria”, Nature Communications 4, 2428, (2013).

Hung YH, Chen LMW, Yang JY, and Yang WY, “Spatiotemporally controlled induction of autophagy-mediated lysosome turnover”, Nature Communications 4, 2111, (2013).

Nature Reviews Molecular Cell Biology 14, 465, (2013).

Kuang E et al., “Regulation of ATG4B Stability by RNF5 Limits Basal Levels of Autophagy and Influences Susceptibility to Bacterial Infection”, PLoS Genetics, 8(10): e1003007, (2012).

Klionsky DJ et al., “Guidelines for the use and interpretation of assays for monitoring autophagy”, Autophagy, 8, 445-544, (2012).

Yang HJ, Hsu CL, Yang JY, and Yang WY, “Monodansylpentane as a blue-fluorescent lipid-droplet marker for multi-color live-cell imaging”, PLoS ONE, 7(3): e32693, (2012).

Yang JY and Yang WY, “Spatiotemporally controlled initiation of Parkin-mediated mitophagy within single living cells”, Autophagy, 7, 1230-1238, (2011).

Yang JY and Yang WY, “Site-specific two-color protein labeling for FRET studies using split inteins”, Journal of the American Chemical Society, 131, 11644-5, (2009).

Pre- Academia Sinica Publications

Xie XS, Yu J, Yang WY, “Living cells as test tubes: Probing biochemistry with advanced optical imaging”, Science, 14, 228-30, (2006).

Yang WY and Gruebele M, “Binary and ternary aggregation within tethered protein constructs”, Biophysical Journal, 90, 1-8, (2006).

Yang WY and Gruebele M, “Kinetic equivalence of the heat of cold structural transitions of lambda6-85”, Philosophical Transaction of the Royal Society of London. Series  A, 363, 565-73, (2005).

Nan X, Yang WY and Xie XS, “CARS microscopy lights up lipids in living cells”, Biophotonics International, August, 44-7, (2004).

Larios E, Yang WY, Schulten K and Gruebele M, “A similarity measure for partially folded proteins: application to unfolded and native-like conformational fluctuations”, Chemical Physics, 307, 217-25, (2004).

Yang WY and Gruebele M, “Rate-Temperature relationships in lambda-repressor fragment lambda6-85 folding”, Biochemistry, 43, 13018-25, (2004).

Yang WY and Gruebele M, “Folding lambda-repressor at its speed limit”, Biophysical Journal, 87, 596-608, (2004).

Yang WY and Gruebele M, “Detection-dependent kinetics probe folding landscape microstructure”, Journal of the American Chemical Society, 126, 7758-9, (2004)

Yang WY, Pitera JW, Swopes WS and Gruebele M, “Heterogeneous folding of the trpzip hairpin: Full atom simulation and experiment”, Journal of Molecular Biology, 336, 241-51, (2004).

Yang WY, Larios E and Gruebele M, “On the beta-structure propensity of polypeptides at high temperatures”, Journal of the American Chemical Society, 125, 16220-7, (2003).

Yang WY and Gruebele M, “Folding at the speed limit”, Nature, 423, 193-7, (2003).

Yang WY, Prince RB, Sabelko J, Moore JS and Gruebele M, “Transition from exponential to nonexponential kinetics during formation of a nonbiological helix”, Journal of the American Chemical Society, 122, 3248-9, (2000).